Package org.biojava.nbio.structure.align.multiple
package org.biojava.nbio.structure.align.multiple
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ClassDescriptionAbstact implementation of the
ScoresCachewith the shared code used in all objects with a variables cache.A Block is a Data Structure that stores aligned positions of aMultipleAlignmentwith the condition that residues are in a sequential order.General implementation of aBlockthat supports any type of sequential alignment with gaps.A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment.A general implementation of a BlockSet to store a flexible part of a multiple alignment.A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.A MultipleAlignmentEnsemble is a collection ofMultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).A general implementation of aMultipleAlignmentEnsemble.A general implementation of aMultipleAlignment.Interface for classes which implement a temporary cache for various numeric scores, e.g.