QsAlignParameters (biojava 6.1.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.quaternary.QsAlignParameters

```
public class QsAlignParameters
extends Object
```
The parameter bean for the QsAlign algorithm.

Since:

5.0.0

Author:

Aleix Lafita

Constructor Summary

Constructors
Constructor Description

QsAlignParameters()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`double`	`getdCutoff()`	The maximum allowed distance between the centroids of two equivalent Subunits, in A.
`double`	`getMaxOrientationAngle()`	The maximum orientation angle between two equivalent Subunits, in radians.
`double`	`getMaxRmsd()`	The maximum allowed RMSD of the alignment, in A.
`void`	`setdCutoff(double dCutoff)`	The maximum allowed distance between the centroids of two equivalent Subunits, in A.
`void`	`setMaxOrientationAngle(double maxOrientationAngle)`	The maximum orientation angle between two equivalent Subunits, in radians.
`void`	`setMaxRmsd(double maxRmsd)`	The maximum allowed RMSD of the alignment, in A.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - QsAlignParameters
```
public QsAlignParameters()
```
- Method Detail
  - getdCutoff
```
public double getdCutoff()
```
    The maximum allowed distance between the centroids of two equivalent Subunits, in A.
    
    Returns:
    
    dCutoff
  - setdCutoff
```
public void setdCutoff(double dCutoff)
```
    The maximum allowed distance between the centroids of two equivalent Subunits, in A.
    
    Parameters:
    
    dCutoff -
  - getMaxRmsd
```
public double getMaxRmsd()
```
    The maximum allowed RMSD of the alignment, in A.
    
    Returns:
    
    maxRmsd
  - setMaxRmsd
```
public void setMaxRmsd(double maxRmsd)
```
    The maximum allowed RMSD of the alignment, in A.
    
    Parameters:
    
    maxRmsd -
  - getMaxOrientationAngle
```
public double getMaxOrientationAngle()
```
    The maximum orientation angle between two equivalent Subunits, in radians. Range [0, Pi].
    
    Returns:
    
    the maximum orientation angle
  - setMaxOrientationAngle
```
public void setMaxOrientationAngle(double maxOrientationAngle)
```
    The maximum orientation angle between two equivalent Subunits, in radians. Range [0, Pi].
    
    Parameters:
    
    maxOrientationAngle - maximum orientation angle