Class SmithWaterman3Daligner

  • All Implemented Interfaces:

    public class SmithWaterman3Daligner
    extends AbstractStructureAlignment
    implements StructureAlignment
    Provides a 3D superimposition of two structures based on their sequence alignment.

    This algorithm includes a final step to iteratively drop columns of the alignment until a maximum RMSD threshold of the superimposition, or the minimum alignment length theshold, are fulfilled, similar to what pymol align algorithm does.

    Andreas Prlic, Aleix Lafita