Uses of Class
org.biojava.nbio.structure.cath.CathDomain
Packages that use CathDomain
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Uses of CathDomain in org.biojava.nbio.structure.cath
Methods in org.biojava.nbio.structure.cath that return CathDomainModifier and TypeMethodDescriptionCathDatabase.getDescriptionByCathId(String cathId) Return CATH description for CATH domain ID.CathInstallation.getDescriptionByCathId(String cathId) CathDatabase.getDescriptionByNodeId(String nodeId) Return CATH description for node representative by node ID.CathInstallation.getDescriptionByNodeId(String nodeId) CathDatabase.getDomainByCathId(String cathId) Return CATH domain for CATH domain ID.CathInstallation.getDomainByCathId(String cathId) Methods in org.biojava.nbio.structure.cath that return types with arguments of type CathDomainModifier and TypeMethodDescriptionCathDatabase.filterByCathCode(String query) Return list of CATH descriptions whose CATH codes (e.g. 1.4.6.10) start with the query.CathInstallation.filterByCathCode(String query) CathDatabase.filterByDescription(String query) Return list of CATH descriptions whose descriptions (name field) starts with the query.CathInstallation.filterByDescription(String query) CathDatabase.filterByNodeName(String query) Return list of CATH domains whose node name (e.g.CathInstallation.filterByNodeName(String query) CathDatabase.getByCategory(CathCategory category) Return list of CATH descriptions for node representatives at a CATH category (e.g.CathInstallation.getByCategory(CathCategory category) CathDatabase.getDomainsByNodeId(String nodeId) Return all CATH domains for a particular CATH node.CathInstallation.getDomainsByNodeId(String nodeId) CathDatabase.getDomainsForPdb(String pdbId) Return all CATH domains for a PDB ID.CathInstallation.getDomainsForPdb(String pdbId) Methods in org.biojava.nbio.structure.cath with parameters of type CathDomainModifier and TypeMethodDescriptionCathDatabase.getTree(CathDomain domain) Return the CATH sub-tree for a particular domain.CathInstallation.getTree(CathDomain domain)