Uses of Class
org.biojava.nbio.structure.AtomPositionMap

Packages that use AtomPositionMap

Package	Description
org.biojava.nbio.structure	Interfaces and classes for protein structure (PDB).

Uses of AtomPositionMap in org.biojava.nbio.structure

Methods in org.biojava.nbio.structure with parameters of type AtomPositionMap

Modifier and Type	Method	Description
boolean	ResidueRange.contains(ResidueNumber residueNumber, AtomPositionMap map)
ResidueNumber	ResidueRange.getResidue(int positionInRange, AtomPositionMap map)	Returns the ResidueNumber that is at position positionInRange in this ResidueRange.
Iterator<ResidueNumber>	ResidueRange.iterator(AtomPositionMap map)	Returns a new Iterator over every ResidueNumber in this ResidueRange.
Iterator<ResidueNumber>	ResidueRangeAndLength.iterator(AtomPositionMap map)	Returns a new Iterator over every ResidueNumber in this ResidueRange.
static Iterator<ResidueNumber>	ResidueRange.multiIterator(AtomPositionMap map, List<? extends ResidueRange> rrs)	Returns a new Iterator over every ResidueNumber in the list of ResidueRanges.
static Iterator<ResidueNumber>	ResidueRange.multiIterator(AtomPositionMap map, ResidueRange... rrs)	Returns a new Iterator over every ResidueNumber in the list of ResidueRanges.
static ResidueRangeAndLength	ResidueRangeAndLength.parse(String s, AtomPositionMap map)	Parses a residue range.
static List<ResidueRangeAndLength>	ResidueRangeAndLength.parseMultiple(String s, AtomPositionMap map)
static List<ResidueRangeAndLength>	ResidueRangeAndLength.parseMultiple(List<String> ranges, AtomPositionMap map)

Constructors in org.biojava.nbio.structure with parameters of type AtomPositionMap

Modifier	Constructor	Description
	AugmentedResidueRange(String chain, String start, String end, int length, AtomPositionMap map)
	AugmentedResidueRange(String chain, ResidueNumber start, ResidueNumber end, int length, AtomPositionMap map)