Class InterfaceFinder


  • public class InterfaceFinder
    extends Object
    A class containing methods to find interfaces in a given structure.
    Since:
    5.4.0
    Author:
    Jose Duarte
    • Method Detail

      • setCutoff

        public void setCutoff​(double cutoff)
        Set the contact distance cutoff.
        Parameters:
        cutoff - the distance value in Angstroms
      • getAllInterfaces

        public StructureInterfaceList getAllInterfaces()
        Find all inter polymer-chain interfaces in the structure. Two chains will be considered in contact if at least a pair of atoms (one from each chain) is within the contact cutoff.
        Returns:
        the list of all interfaces