Class LocalProteinDomainParser

  • public class LocalProteinDomainParser
    extends Object
    Protein Domain Parser is a an algorithm that attempts at assigning domains for 3D protein structures. Since domains in proteins are difficult to define, results detected by automated algorithms have to be taken with a grain of salt. see
    J Mol Biol. 2004 Jun 4;339(3):647-78.
    Toward consistent assignment of structural domains in proteins.
    Veretnik S, Bourne PE, Alexandrov NN, Shindyalov IN.
    This implementation is based on a Java port of the PDP algorithm, as described in:
    Andreas Prlic