LogColorMapper (biojava 6.1.0 API)

java.lang.Object
- org.biojava.nbio.structure.gui.util.color.ContinuousColorMapperTransform
- - org.biojava.nbio.structure.gui.util.color.LogColorMapper

All Implemented Interfaces:

ContinuousColorMapper
```
public class LogColorMapper
extends ContinuousColorMapperTransform
```
Performs a log10 transform on input before passing the values off to another colorMapper. For instance, to map [10^0, 10^10] to a rainbow gradient, use new LogColorMapper(GradientMapper.getGradientMapper(GradientMapper.RAINBOW_GRADIENT, 0, 10))

Author:

Spencer Bliven

Field Summary
- Fields inherited from class org.biojava.nbio.structure.gui.util.color.ContinuousColorMapperTransform
  mapper

Constructor Summary

Constructors
Constructor	Description
`LogColorMapper(ContinuousColorMapper logspaceMapper)`	Creates a new LogColorMapper with base 10.
`LogColorMapper(ContinuousColorMapper logspaceMapper, int base)`	If logspaceMapper maps values x1 to x2, this creates a mapper for values base^x1 to base^x2

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

double transform(double value)
Apply log transform.
- Methods inherited from class org.biojava.nbio.structure.gui.util.color.ContinuousColorMapperTransform
  getColor
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - LogColorMapper
```
public LogColorMapper(ContinuousColorMapper logspaceMapper)
```
    Creates a new LogColorMapper with base 10.
    
    Parameters:
    
    logspaceMapper -
  - LogColorMapper
```
public LogColorMapper(ContinuousColorMapper logspaceMapper,
                      int base)
```
    If logspaceMapper maps values x1 to x2, this creates a mapper for values base^x1 to base^x2
    
    Parameters:
    
    logspaceMapper - logspace mapper
    
    base - The base of the logorithm
- Method Detail
  - transform
```
public double transform(double value)
```
    Apply log transform.
    
    Specified by:
    
    transform in class ContinuousColorMapperTransform
    
    Parameters:
    
    value -
    
    Returns:
    
    log_b(value)
    
    See Also:
    
    ContinuousColorMapperTransform.transform(double)