Package org.biojava.nbio.structure.io.cif

Class ChemCompConverter

java.lang.Object

org.biojava.nbio.structure.io.cif.ChemCompConverter

public class ChemCompConverter
extends Object

Convert CifFiles to chem comps.

Since:

6.0.0

Author:

Sebastian Bittrich

Constructor Summary

Constructors

Constructor	Description
ChemCompConverter()

Method Summary

Modifier and Type	Method	Description
static ChemicalComponentDictionary	fromCifFile(org.rcsb.cif.model.CifFile cifFile)	Convert CifFile to chem comp dictionary.
static ChemicalComponentDictionary	fromInputStream(InputStream inputStream)	Convert InputStream to chem comp dictionary.
static ChemicalComponentDictionary	fromPath(Path path)	Read data from a file and convert to chem comp dictionary.
static ChemicalComponentDictionary	fromURL(URL url)	Get data from a URL and convert to chem comp dictionary.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ChemCompConverter

public ChemCompConverter()

Method Details

fromPath

public static ChemicalComponentDictionary fromPath(Path path)
                                            throws IOException

Read data from a file and convert to chem comp dictionary.

Parameters:

path - the source of information - can be gzipped or binary or text data

Returns:

the target

Throws:

IOException

fromURL

public static ChemicalComponentDictionary fromURL(URL url)
                                           throws IOException

Get data from a URL and convert to chem comp dictionary.

Parameters:

url - the source of information - can be gzipped or binary or text data

Returns:

the target

Throws:

IOException - thrown when reading fails

fromInputStream

public static ChemicalComponentDictionary fromInputStream(InputStream inputStream)
                                                   throws IOException

Convert InputStream to chem comp dictionary.

Parameters:

inputStream - the InputStream of information - can be gzipped or binary or text data

Returns:

the target

Throws:

IOException - thrown when reading fails

See Also:

• CifStructureConverter.fromInputStream(InputStream, FileParsingParameters)

fromCifFile

public static ChemicalComponentDictionary fromCifFile(org.rcsb.cif.model.CifFile cifFile)

Convert CifFile to chem comp dictionary.

Parameters:

cifFile - the source

Returns:

the target