Package org.biojava.nbio.structure.io.sifts

Class SiftsMappingProvider

java.lang.Object

org.biojava.nbio.structure.io.sifts.SiftsMappingProvider

public class SiftsMappingProvider
extends Object

Constructor Summary

Constructors

Constructor	Description
SiftsMappingProvider()

Method Summary

Modifier and Type	Method	Description
static List<SiftsEntity>	getSiftsMapping(String pdbId)	Return the SIFTS mappings by getting the info from individual SIFTS xml files at URL "https://ftp.ebi.ac.uk/pub/databases/msd/sifts/xml/%s.xml.gz"
static void	setFileLocation(String myFileLocation)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SiftsMappingProvider

public SiftsMappingProvider()

Method Details

setFileLocation

public static void setFileLocation(String myFileLocation)

getSiftsMapping

public static List<SiftsEntity> getSiftsMapping(String pdbId)
                                         throws IOException

Return the SIFTS mappings by getting the info from individual SIFTS xml files at URL "https://ftp.ebi.ac.uk/pub/databases/msd/sifts/xml/%s.xml.gz"

Parameters:

pdbId - the pdb identifier

Returns:

Throws:

IOException - if problems downloading or parsing the file