Package org.biojava.nbio.structure.scop

Class ScopDescription

java.lang.Object

org.biojava.nbio.structure.scop.ScopDescription

All Implemented Interfaces:

Serializable, Cloneable

public class ScopDescription
extends Object
implements Serializable, Cloneable

Contains data from dir.des.scop.txt_1.75

e.g

 SunID  Cat     Class           Name    Description
 -----  ---     -----           ----    -----------
 26154  px      b.47.1.2        d1nrs.1 1nrs L:,H:
 125030 px      b.47.1.2        d1zgia1 1zgi A:1A-245
 

Author:

Andreas Prlic

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
ScopDescription()

Method Summary

Modifier and Type	Method	Description
protected Object	clone()
boolean	equals(Object obj)	Compares the fields sunID, category, classificationId, and name for equality
ScopCategory	getCategory()
String	getClassificationId()
String	getClassificationId(ScopCategory category)	Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).
String	getDescription()
String	getName()
int	getSunID()
int	hashCode()
void	setCategory(ScopCategory category)
void	setClassificationId(String classificationId)
void	setDescription(String description)
void	setName(String name)
void	setSunID(int sunID)
String	toString()

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ScopDescription

public ScopDescription()

Method Details

toString

public String toString()

Overrides:

toString in class Object

getSunID

public int getSunID()

setSunID

public void setSunID(int sunID)

getCategory

public ScopCategory getCategory()

setCategory

public void setCategory(ScopCategory category)

getClassificationId

public String getClassificationId()

setClassificationId

public void setClassificationId(String classificationId)

getName

public String getName()

setName

public void setName(String name)

getDescription

public String getDescription()

setDescription

public void setDescription(String description)

getClassificationId

public String getClassificationId(ScopCategory category)

Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).

Example: for SCOP family "b.5.1.1", getClassificationId(ScopCategory.Superfamily) => "b.5.1"

hashCode

public int hashCode()

Overrides:

hashCode in class Object

Returns:

See Also:

• Object.hashCode()

equals

public boolean equals(Object obj)

Compares the fields sunID, category, classificationId, and name for equality

Overrides:

equals in class Object

Parameters:

obj -

Returns:

See Also:

• Object.equals(java.lang.Object)

clone

protected Object clone()
                throws CloneNotSupportedException

Overrides:

clone in class Object

Throws:

CloneNotSupportedException