|Constructor and Description|
|Modifier and Type||Method and Description|
Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
public static QuatSymmetryScores calcScores(QuatSymmetrySubunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation)
subunits- subunits to be scored
transformation- transformation matrix
permutations- permutation that determines which subunits are superposed
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