Class Rotation

    • Method Detail

      • getSubunitRmsd

        public double getSubunitRmsd()
        Returns:
        the subunitRmsd
      • setSubunitRmsd

        public void setSubunitRmsd​(double subunitRmsd)
        Parameters:
        subunitRmsd - the subunitRmsd to set
      • getTraceRmsd

        public double getTraceRmsd()
        Returns:
        the traceRmsd
      • setTraceRmsd

        public void setTraceRmsd​(double traceRmsd)
        Parameters:
        traceRmsd - the traceRmsd to set
      • setTraceTmScoreMin

        public void setTraceTmScoreMin​(double traceTmScoreMin)
        Parameters:
        traceTmScoreMin - the traceTmScore to set
      • setPermutation

        public void setPermutation​(List<Integer> permutation)
        Parameters:
        permutation - the permutation to set
      • getTransformation

        public javax.vecmath.Matrix4d getTransformation()
        Returns:
        the transformation
      • setTransformation

        public void setTransformation​(javax.vecmath.Matrix4d transformation)
        Parameters:
        transformation - the transformation to set
      • getFold

        public int getFold()
        Returns:
        the fold
      • setFold

        public void setFold​(int fold)
        Parameters:
        fold - the fold to set
      • getDirection

        public int getDirection()
        Returns:
        the direction
      • setDirection

        public void setDirection​(int axis)
        Parameters:
        direction - the direction to set
      • getAxisAngle

        public javax.vecmath.AxisAngle4d getAxisAngle()
        Returns:
        the axisAngle
      • setAxisAngle

        public void setAxisAngle​(javax.vecmath.AxisAngle4d axisAngle)
        Parameters:
        axisAngle - the axisAngle to set
      • getNStart

        public int getNStart()
        Returns the number of starts if this rotation represents a helical rotation