Uses of Interface
org.biojava.nbio.ws.alignment.RemotePairwiseAlignmentOutputProperties

Packages that use RemotePairwiseAlignmentOutputProperties

Package	Description
org.biojava.nbio.ws.alignment	This package contains the interfaces that need to be implemented by discrete alignment services.
org.biojava.nbio.ws.alignment.qblast

Uses of RemotePairwiseAlignmentOutputProperties in org.biojava.nbio.ws.alignment

Methods in org.biojava.nbio.ws.alignment with parameters of type RemotePairwiseAlignmentOutputProperties

Modifier and Type	Method	Description
InputStream	RemotePairwiseAlignmentService.getAlignmentResults(String rid, RemotePairwiseAlignmentOutputProperties out)	Getting the actual alignment results from this instantiated service for a given ID with specific formatting parameters held in a RemotePairwiseAlignmentOutputProperties-implemented object.

Uses of RemotePairwiseAlignmentOutputProperties in org.biojava.nbio.ws.alignment.qblast

Classes in org.biojava.nbio.ws.alignment.qblast that implement RemotePairwiseAlignmentOutputProperties

Modifier and Type	Class	Description
class	NCBIQBlastOutputProperties	This class wraps a QBlast output parameter Map by adding several convenient parameter addition methods.

Methods in org.biojava.nbio.ws.alignment.qblast with parameters of type RemotePairwiseAlignmentOutputProperties

Modifier and Type	Method	Description
InputStream	NCBIQBlastService.getAlignmentResults(String id, RemotePairwiseAlignmentOutputProperties outputProperties)	Extracts the actual Blast report for given request id according to options provided in outputProperties argument.