001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on DATE
021 *
022 */
023
024package org.biojava.nbio.core.sequence;
025
026
027
028
029/**
030 *
031 * @author Scooter Willis
032 */
033public class IntronSequence extends DNASequence{
034
035
036        /**
037         * Place holder for Intron sequence features
038         * @param parentGeneSequence
039         * @param begin
040         * @param end
041         */
042
043        public IntronSequence(GeneSequence parentGeneSequence, int begin, int end){
044                this.setParentSequence(parentGeneSequence);
045                setBioBegin(begin);
046                setBioEnd(end);
047
048        }
049
050                @Override
051        public int getLength() {
052                return Math.abs(this.getBioEnd() - this.getBioBegin()) + 1;
053        }
054
055}