Package | Description |
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org.biojava.bio.program.homologene |
Support classes for Homologene data.
|
Modifier and Type | Class and Description |
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static class |
SimilarityType.PlaceHolder |
Modifier and Type | Field and Description |
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static SimilarityType |
SimilarityType.CURATED |
static SimilarityType |
SimilarityType.MULTIPLE |
static SimilarityType |
SimilarityType.TWIN |
Modifier and Type | Method and Description |
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SimilarityType |
SimpleOrthoPair.getSimilarity() |
SimilarityType |
OrthoPair.getSimilarity()
gets the second orthologue in the
orthology relationship.
|
Modifier and Type | Method and Description |
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OrthoPair |
SimpleHomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity) |
OrthoPair |
HomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
Create a computed orthology entry.
|
Constructor and Description |
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OrthoPairFilter.BySimilarityType(SimilarityType type) |
SimpleOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
constructor for the computed form
of an orthology relationship.
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