Package | Description |
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org.biojavax.bio.phylo.io.nexus |
Classes to support the I/O of Nexus files.
|
Modifier and Type | Interface and Description |
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interface |
CharactersBlockListener
Listens to events that represent Nexus characters blocks.
|
interface |
DataBlockListener
Listens to events that represent Nexus data blocks.
|
interface |
DistancesBlockListener
Listens to events that represent Nexus distances blocks.
|
interface |
NexusBlockBuilder
Builds a Nexus block from listening to events.
|
interface |
TaxaBlockListener
Listens to events that represent Nexus taxa blocks.
|
interface |
TreesBlockListener
Listens to events that represent Nexus trees blocks.
|
Modifier and Type | Class and Description |
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class |
CharactersBlockBuilder
Builds Nexus characters blocks.
|
class |
DataBlockBuilder
Builds Nexus characters blocks.
|
class |
DistancesBlockBuilder
Builds Nexus distances blocks.
|
static class |
NexusBlockBuilder.Abstract
This abstract version knows how to build and add comments.
|
class |
TaxaBlockBuilder
Builds Nexus taxa blocks.
|
class |
TreesBlockBuilder
Builds Nexus taxa blocks.
|
Modifier and Type | Method and Description |
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NexusBlockListener |
NexusBlockParser.getBlockListener()
Obtain the listener for this parser.
|
NexusBlockListener |
NexusBlockParser.Abstract.getBlockListener() |
Constructor and Description |
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NexusBlockParser.Abstract(NexusBlockListener blockListener) |
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