001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojava.bio.seq.io.agave; 022import org.xml.sax.Attributes; 023import org.xml.sax.SAXException; 024 025/** 026 * 027 * @author Hanning Ni Doubletwist Inc 028 */ 029public class AGAVEComputationHandler 030 extends StAXFeatureHandler 031 032{ 033 public static final StAXHandlerFactory AGAVE_COMPUTATION_HANDLER_FACTORY 034 = new StAXHandlerFactory() { 035 public StAXContentHandler getHandler(StAXFeatureHandler staxenv) { 036 return new AGAVEComputationHandler(staxenv); 037 } 038 }; 039 040 AGAVEComputationHandler(StAXFeatureHandler staxenv) { 041 // setup up environment stuff 042 super( staxenv ); 043 featureListener = staxenv.featureListener; 044 setHandlerCharacteristics("computation", true); 045 } 046 047 048 /** 049 * currently we do not handler >computation< as subtag of sciobj yet 050 */ 051 public void startElementHandler( 052 String nsURI, 053 String localName, 054 String qName, 055 Attributes attrs) 056 throws SAXException 057 058 { 059 throw new SAXException( "tag <computation> is not supported as sub-tag of sciobj yet") ; 060 } 061 062}