001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 */
021package org.biojava.bio.seq.io.agave;
022import org.biojava.utils.ChangeVetoException;
023import org.xml.sax.SAXException;
024
025/**
026 * Deals with note
027 * 
028 * @author Hanning Ni    Doubletwist Inc
029 */
030public class AGAVENotePropHandler
031               extends StAXPropertyHandler
032{
033  // set up factory method
034  public static final StAXHandlerFactory AGAVE_NOTE_PROP_HANDLER_FACTORY
035    = new StAXHandlerFactory() {
036    public StAXContentHandler getHandler(StAXFeatureHandler staxenv) {
037      return new AGAVENotePropHandler(staxenv);
038    }
039  };
040
041
042  AGAVENotePropHandler(StAXFeatureHandler staxenv) {
043    // execute superclass method to setup environment
044    super(staxenv);
045
046    setHandlerCharacteristics("note", true);
047  }
048
049   public void characters(char[] ch, int start, int length)
050        throws SAXException
051  {
052      try{
053          staxenv.featureTemplate.annotation.setProperty("note", new String(ch) );
054      }catch (ChangeVetoException cve) {
055        throw new SAXException(" change veto exception ") ;
056    }
057  }
058
059}