001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojavax.bio.phylo.io.nexus; 022 023import org.biojavax.bio.phylo.io.nexus.TreesBlock.NewickTreeString; 024 025/** 026 * Builds Nexus taxa blocks. 027 * 028 * @author Richard Holland 029 * @author Tobias Thierer 030 * @author Jim Balhoff 031 * @since 1.6 032 */ 033public class TreesBlockBuilder extends NexusBlockBuilder.Abstract implements 034 TreesBlockListener { 035 036 private TreesBlock block; 037 038 protected void addComment(final NexusComment comment) { 039 this.block.addComment(comment); 040 } 041 042 protected NexusBlock startBlockObject() { 043 this.block = new TreesBlock(); 044 this.resetStatus(); 045 return this.block; 046 } 047 048 private void resetStatus() { 049 // Nothing to do. 050 } 051 052 public void endBlock() { 053 // Don't care. 054 } 055 056 public void endTokenGroup() { 057 // Nothing to do. 058 } 059 060 public void addTranslation(String label, String taxa) { 061 this.block.addTranslation(label, taxa); 062 } 063 064 public void addTree(String label, NewickTreeString tree) { 065 this.block.addTree(label, tree); 066 } 067 068}