org.biojava.bio.search

Interfaces

• BioMatcher
• BioPattern
• BlastLikeSearchFilter
• BlastLikeSearchFilter.Node
• FilterTest
• SearchBuilder
• SearchContentHandler
• SeqSimilaritySearcher
• SeqSimilaritySearchHit
• SeqSimilaritySearchResult
• SeqSimilaritySearchSubHit

Classes

• BlastLikeSearchFilter.AbstractBlastLikeSearchFilter
• BlastLikeSearchFilter.And
• BlastLikeSearchFilter.ByHitProperty
• BlastLikeSearchFilter.BySearchProperty
• BlastLikeSearchFilter.BySubHitProperty
• BlastLikeSearchFilter.Not
• BlastLikeSearchFilter.Or
• FilteringContentHandler
• FilterTest.Equals
• FilterTest.FindRegex
• FilterTest.GreaterThan
• FilterTest.LessThan
• FilterTest.MatchRegex
• KnuthMorrisPrattSearch
• MaxMismatchMatcher
• MaxMismatchPattern
• SearchContentAdapter
• SearchContentFilter
• SearchContentHandlerDebugger
• SeqContentPattern
• SeqSimilaritySearchHit.ByScoreComparator
• SeqSimilaritySearchHit.BySubHitCountComparator
• SeqSimilaritySearchSubHit.ByScoreComparator
• SeqSimilaritySearchSubHit.BySubjectStartComparator
• SequenceDBSearchHit
• SequenceDBSearchResult
• SequenceDBSearchSubHit
• SimpleSeqSimilaritySearchHit
• SimpleSeqSimilaritySearchResult
• SimpleSeqSimilaritySearchSubHit