org.biojava.bio.seq.io.agave

Interfaces

• AGAVEAnnotFilter
• AGAVEAnnotFilterFactory
• AGAVEBioSeqCallbackItf
• AGAVECallbackItf
• AGAVEChromosomeCallbackItf
• AGAVEContigCallbackItf
• AGAVEDbIdCallbackItf
• AGAVEDbIdPropCallbackItf
• AGAVEEvidenceCallbackItf
• AGAVEFeatureCallbackItf
• AGAVEIdAliasCallbackItf
• AGAVEXrefCallbackItf
• DelegationManager
• ElementRecognizer
• SequenceHandler
• StAXContentHandler
• StAXHandlerFactory

Classes

• Agave2AgaveAnnotFilter
• AGAVEAltIdsPropHandler
• AGAVEAnnotationsHandler
• AGAVEAssemblyHandler
• AGAVEBioSeqHandler
• AGAVEBioSequenceHandler
• AGAVECdsHandler
• AGAVEChromosomeHandler
• AGAVEClassificationHandler
• AGAVECompResultHandler
• AGAVEComputationHandler
• AGAVEContigHandler
• AGAVEDbId
• AGAVEDbIdPropHandler
• AGAVEDescPropHandler
• AGAVEElementIdPropHandler
• AGAVEEvidenceHandler
• AGAVEExonsPropHandler
• AGAVEFragmentOrderHandler
• AGAVEFragmentOrientationHandler
• AGAVEGeneHandler
• AGAVEHandler
• AGAVEIdAlias
• AGAVEIdAliasPropHandler
• AGAVEKeywordPropHandler
• AGAVEMapLocation
• AGAVEMapLocationPropHandler
• AGAVEMapPosition
• AGAVEMapPositionPropHandler
• AGAVEMatchAlignPropHandler
• AGAVEMatchDescPropHandler
• AGAVEMatchRegion
• AGAVEMatchRegionPropHandler
• AGAVEMrnaHandler
• AGAVENotePropHandler
• AGAVEPredictedProteinHandler
• AGAVEProperty
• AGAVEQualifierPropHandler
• AGAVEQueryRegion
• AGAVEQueryRegionPropHandler
• AGAVERelatedAnnot
• AGAVERelatedAnnotPropHandler
• AGAVEResultGroupHandler
• AGAVEResultPropertyPropHandler
• AGAVESciPropertyPropHandler
• AGAVESeqFeatureHandler
• AGAVESeqLocationPropHandler
• AGAVESeqMapHandler
• AGAVESeqPropHandler
• AGAVETranscriptHandler
• AGAVEUnorderedFragmentsHandler
• AGAVEViewPropHandler
• AgaveWriter
• AGAVEXref
• AGAVEXrefPropHandler
• AGAVEXrefPropPropHandler
• AGAVEXrefs
• AGAVEXrefsPropHandler
• ElementRecognizer.AllElementRecognizer
• ElementRecognizer.ByLocalName
• ElementRecognizer.ByNSName
• ElementRecognizer.HasAttribute
• Embl2AgaveAnnotFilter
• SAX2StAXAdaptor
• SimpleAnnotFilter
• StAXContentHandlerBase
• StAXFeatureHandler
• StAXPropertyHandler
• UtilHelper