Package | Description |
---|---|
org.biojavax.bio.db.biosql |
Interface between biojava and biosql databases
|
Modifier and Type | Class and Description |
---|---|
class |
BioSQLAcceptAllFilter
The class that accepts all features.
|
class |
BioSQLAcceptNoneFilter
The class that accepts no features.
|
static class |
BioSQLFeatureFilter.And
A filter that returns all features accepted by both child filter.
|
static class |
BioSQLFeatureFilter.ByName
Construct one of these to filter features by display name.
|
static class |
BioSQLFeatureFilter.ByNote
A filter that returns all features that have the given note, and
the value and rank is checked as well.
|
static class |
BioSQLFeatureFilter.ByNoteTermOnly
A filter that returns all features that have a note with the given term.
|
static class |
BioSQLFeatureFilter.ByRank
Construct one of these to filter features by rank.
|
static class |
BioSQLFeatureFilter.BySequenceName
Accept features that reside on a sequence with a particular name.
|
static class |
BioSQLFeatureFilter.BySourceTerm
Construct one of these to filter features by source.
|
static class |
BioSQLFeatureFilter.BySourceTermName
Construct one of these to filter features by source (name only - parent ontology
is ignored).
|
static class |
BioSQLFeatureFilter.ByStrand
A filter that returns all features having locations on a given strand.
|
static class |
BioSQLFeatureFilter.ByTypeTerm
Construct one of these to filter features by type.
|
static class |
BioSQLFeatureFilter.ByTypeTermName
Construct one of these to filter features by type (name only - parent ontology
is ignored).
|
static class |
BioSQLFeatureFilter.ContainedByRichLocation
A filter that returns all features contained within a location.
|
static class |
BioSQLFeatureFilter.HibernateFeatureFilter
A filter for Hibernate-BioSQL filters to extend.
|
static class |
BioSQLFeatureFilter.Not
A filter that returns all features not accepted by a child filter.
|
static class |
BioSQLFeatureFilter.Or
A filter that returns all features accepted by at least one child filter.
|
static class |
BioSQLFeatureFilter.OverlapsRichLocation
A filter that returns all features overlapping a location.
|
Modifier and Type | Field and Description |
---|---|
static BioSQLFeatureFilter |
BioSQLFeatureFilter.all
All features are selected by this filter.
|
static BioSQLFeatureFilter |
BioSQLFeatureFilter.none
No features are selected by this filter.
|
Modifier and Type | Method and Description |
---|---|
static BioSQLFeatureFilter |
BioSQLFeatureFilter.Tools.convert(FeatureFilter ff)
Convert a non-BioSQL FeatureFilter into a BioSQL one.
|
BioSQLFeatureFilter |
BioSQLFeatureFilter.Not.getChild() |
BioSQLFeatureFilter |
BioSQLFeatureFilter.And.getChild1() |
BioSQLFeatureFilter |
BioSQLFeatureFilter.Or.getChild1() |
BioSQLFeatureFilter |
BioSQLFeatureFilter.And.getChild2() |
BioSQLFeatureFilter |
BioSQLFeatureFilter.Or.getChild2() |
Constructor and Description |
---|
And(BioSQLFeatureFilter c1,
BioSQLFeatureFilter c2) |
Not(BioSQLFeatureFilter child) |
Or(BioSQLFeatureFilter c1,
BioSQLFeatureFilter c2) |
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