BioException (biojava-legacy 1.9.5 API)

java.lang.Object
- java.lang.Throwable
- - java.lang.Exception
  - - org.biojava.bio.BioException

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

AutomatonException, CircularReferenceException, DuplicateTaxonException, IllegalAlphabetException, IllegalIDException, IllegalSymbolException, IllegalTransitionException, ParseException, RegexException, UnsupportedChromatogramFormatException
```
public class BioException
extends Exception
```
A nestable biological exception. Catch this whenever a method throws it, and you want to handle the exception. Throw this whenever you have caught a Throwable and need to throw an Exception or BioException in your method. Be sure to wrap up any causual throwable. It makes debugging your (and other peoples') code much easier.

Since:

1.0

Author:

Matthew Pocock

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor	Description
`BioException()`	Create a new BioException.
`BioException(String message)`	Create a new BioException with a message.
`BioException(String message, Throwable ex)`	Create a new BioException with a cause and a message.
`BioException(Throwable ex)`	Create a new BioException with a cause.
`BioException(Throwable ex, String message)`	Deprecated. use new BioException(message, ex) instead

Method Summary
- Methods inherited from class java.lang.Throwable
  addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - BioException
```
public BioException(String message)
```
    Create a new BioException with a message.
    
    Parameters:
    
    message - the message
  - BioException
```
public BioException(Throwable ex)
```
    Create a new BioException with a cause.
    
    Parameters:
    
    ex - the Throwable that caused this BioException
  - BioException
```
public BioException(Throwable ex,
                    String message)
```
    Deprecated.
    use new BioException(message, ex) instead
    
    Create a new BioException with a cause and a message.
    
    Parameters:
    
    ex - the Throwable that caused this BioException
    
    message - the message
  - BioException
```
public BioException(String message,
                    Throwable ex)
```
    Create a new BioException with a cause and a message.
    
    Parameters:
    
    message - the message
    
    ex - the Throwable that caused this BioException
  - BioException
```
public BioException()
```
    Create a new BioException.