Class GapDistribution

  • All Implemented Interfaces:
    Serializable, Distribution, Changeable

    public class GapDistribution
    extends Unchangeable
    implements Distribution, Serializable
    This distribution emits gap symbols.

    It is a useful thing to have around for pair-wise alignment, as you can build a PairDistribution that emits gaps in one sequence and Symbols in the other. The GapDistriution will always emit with a probability of 1, as every symbol has a matches alphabet that contains the empty set. Or is this so?

    Matthew Pocock
    See Also:
    Serialized Form