Uses of Interface
org.biojava.bio.dp.ModelTrainer

Packages that use ModelTrainer

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.

Uses of ModelTrainer in org.biojava.bio.dist

Methods in org.biojava.bio.dist with parameters of type ModelTrainer

Modifier and Type	Method	Description
void	PairDistribution.registerWithTrainer(ModelTrainer trainer)	Register this paired distribution with a model trainer.

Uses of ModelTrainer in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement ModelTrainer

Modifier and Type	Class	Description
class	SimpleModelTrainer

Methods in org.biojava.bio.dp with parameters of type ModelTrainer

Modifier and Type	Method	Description
void	SimpleEmissionState.registerWithTrainer(ModelTrainer trainer)
void	Trainable.registerWithTrainer(ModelTrainer mt)	Perform any registration that is necessary with mt.
void	WMAsMM.registerWithTrainer(ModelTrainer modelTrainer)
protected abstract double	AbstractTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
protected double	BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)
protected double	BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList, ScoreType scoreType)
protected double	BaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)