Package org.biojava.bio.dp.twohead
Interface PairDPCursor
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- All Known Implementing Classes:
AbstractMatrixPairDPCursor
,BackMatrixPairDPCursor
,LightPairDPCursor
,MatrixPairDPCursor
public interface PairDPCursor
A cursor over a DP matrix.- Author:
- Matthew Pocock
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description int[]
getDepth()
retrieve the depth of this cursorboolean
hasNext()
test wether the cursor can be advanced furthervoid
next(Cell[][] cells)
retrieve the next block of cellsCell[][]
press()
press out a new correctly sized cell array
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Method Detail
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hasNext
boolean hasNext()
test wether the cursor can be advanced further
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next
void next(Cell[][] cells) throws IllegalSymbolException
retrieve the next block of cells- Throws:
IllegalSymbolException
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getDepth
int[] getDepth()
retrieve the depth of this cursor
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