Uses of Package
org.biojava.bio.dp.twohead

Packages that use org.biojava.bio.dp.twohead

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp

Class	Description
CellCalculatorFactoryMaker	The interface for all functions that can calculate the 'scores' array for a given cell.

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead

Class	Description
AbstractMatrixPairDPCursor
Cell	A single cell in the DP matrix.
CellCalculator	The interface for all functions that can calculate the 'scores' array for a given cell.
CellCalculatorFactory
CellCalculatorFactoryMaker	The interface for all functions that can calculate the 'scores' array for a given cell.
EmissionCache	Cache for columns of emission probabilities in pair-wise alignment algorithms.
PairDPCursor	A cursor over a DP matrix.
PairDPMatrix	Storage structure for intermediate values from a pairwise dynamic programming run.