Package org.biojava.bio.program.abi

ABI Trace Handling.

The ABI trace file format is a proprietary file format that has achieved the status orf a de facto standard given the dominance of the company in sequencing technology.

Interface Summary

Interface	Description
ABIFParser.DataAccess	Concatenation of the Seekable and DataInput interfaces.

Class Summary

Class	Description
ABIFChromatogram	An implementation of Chromatogram to encapulsulate chromatogram data extracted from the files produced by ABI sequencers, such as the the 377 and the 3700.
ABIFParser	A general base parser for files produced by ABI software.
ABIFParser.TaggedDataRecord	An aggregate immutable type for an ABIF tagged data record.
ABITools	Useful functionality for working with fasta files where the quality of the DNA is encoded as upper and lower case DNA characters.
ABITrace	Title: ABITrace ABITrace is a class for managing ABI file information, it is capable of opening an ABI file and storing the most important fields, which can be recalled as simple java types.