Uses of Interface org.biojava.bio.program.gff.GFFDocumentHandler (biojava-legacy 1.9.5 API)

Packages that use GFFDocumentHandler
Package Description

org.biojava.bio.program.gff
GFF manipulation.

Uses of GFFDocumentHandler in org.biojava.bio.program.gff

Classes in org.biojava.bio.program.gff that implement GFFDocumentHandler
Modifier and Type	Class	Description
`class`	`GFFFilterer`	An object that filters a stream of GFF, forwarding some GFFRecords to a listening GFFDocumentHandler, and dropping others.
`class`	`GFFWriter`	Listens to a stream of GFF events and writes the lines to a PrintWriter.

Methods in org.biojava.bio.program.gff that return GFFDocumentHandler
Modifier and Type	Method	Description
`GFFDocumentHandler`	GFFEntrySet.`getAddHandler()`	Get the GFFDocumentHandler for adding to this set.

Methods in org.biojava.bio.program.gff with parameters of type GFFDocumentHandler
Modifier and Type	Method	Description
`protected GFFRecord`	GFFParser.`createRecord(GFFDocumentHandler handler, List aList, String rest, String comment)`	Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.
`protected void`	SequencesAsGFF.`doPreProcessSequence(Sequence seq, GFFDocumentHandler handler, String id)`	Emit any per-sequence header information.
`protected void`	SequencesAsGFF.`doProcessFeature(Feature feature, GFFDocumentHandler handler, String id)`	Internal method to process an individual Feature.
`protected void`	SequencesAsGFF.`doProcessSequence(Sequence seq, GFFDocumentHandler handler, String id)`	Internal method to process an individual Sequence.
`void`	GFFParser.`parse(BufferedReader bReader, GFFDocumentHandler handler)`	Informs handler of each line of gff read from bReader.
`void`	GFFParser.`parse(BufferedReader bReader, GFFDocumentHandler handler, String locator)`	Informs handler of each line of GFF read from bReader
`void`	SequencesAsGFF.`processDB(SequenceDB seqDB, GFFDocumentHandler handler)`	Process all Sequences within a SequenceDB, informing handler of any suitable features.
`void`	SequencesAsGFF.`processSequence(Sequence seq, GFFDocumentHandler handler)`	Process an individual Sequence, informing handler of any suitable features.
`void`	GFFEntrySet.`streamRecords(GFFDocumentHandler handler)`	Write all records in this set out to a handler.

Constructors in org.biojava.bio.program.gff with parameters of type GFFDocumentHandler
Constructor	Description
`GFFFilterer(GFFDocumentHandler handler, GFFRecordFilter filter)`	Create a new GFFFilterer that will forward to handler everything that filter accepts.