Uses of Interface
org.biojava.bio.program.gff.GFFRecordFilter
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Packages that use GFFRecordFilter Package Description org.biojava.bio.program.gff GFF manipulation. -
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Uses of GFFRecordFilter in org.biojava.bio.program.gff
Classes in org.biojava.bio.program.gff that implement GFFRecordFilter Modifier and Type Class Description static class
GFFRecordFilter.AcceptAll
Implementation of GFFRecordFilter that accepts everything.static class
GFFRecordFilter.FeatureFilter
Implementation of GFFRecordFilter that accepts records based upon the feature field.static class
GFFRecordFilter.FrameFilter
static class
GFFRecordFilter.NotFilter
static class
GFFRecordFilter.SequenceFilter
Implementation of GFFRecordFilter that accepts records based upon the sequence name.static class
GFFRecordFilter.SourceFilter
Implementation of GFFRecordFilter that accepts records based upon the source field.static class
GFFRecordFilter.StrandFilter
Fields in org.biojava.bio.program.gff declared as GFFRecordFilter Modifier and Type Field Description static GFFRecordFilter
GFFRecordFilter. ACCEPT_ALL
A GFFRecordFilter that accepts everything.Methods in org.biojava.bio.program.gff that return GFFRecordFilter Modifier and Type Method Description GFFRecordFilter
GFFRecordFilter.NotFilter. getFilter()
Methods in org.biojava.bio.program.gff with parameters of type GFFRecordFilter Modifier and Type Method Description GFFEntrySet
GFFEntrySet. filter(GFFRecordFilter filter)
Filter this entry set into another set.static GFFEntrySet
GFFTools. readGFF(BufferedReader gffIn, GFFRecordFilter recFilt)
Read all GFF entries matching a filter from a buffered reader.static GFFEntrySet
GFFTools. readGFF(File inFile, GFFRecordFilter recFilt)
Reads a GFFEntrySet from a file with the specified filter.static GFFEntrySet
GFFTools. readGFF(String fileName, GFFRecordFilter recFilt)
Deprecated.use: readGff(File,GFFRecordFilter)void
GFFRecordFilter.NotFilter. setFilter(GFFRecordFilter filter)
Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilter Constructor Description GFFFilterer(GFFDocumentHandler handler, GFFRecordFilter filter)
Create a new GFFFilterer that will forward to handler everything that filter accepts.NotFilter(GFFRecordFilter filter)
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