OrthoPair (biojava-legacy 1.9.5 API)

All Known Implementing Classes:

SimpleOrthoPair
```
public interface OrthoPair
```
Each HomologeneEntry represents a single Homologene record that relates two presumptive orthologues.

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`Orthologue`	`getFirstOrthologue()`	gets the first orthologue in the orthology relationship.
`double`	`getPercentIdentity()`	get percentage identity.
`String`	`getRef()`	get reference to evidence for orthology.
`Orthologue`	`getSecondOrthologue()`	gets the first orthologue in the orthology relationship.
`SimilarityType`	`getSimilarity()`	gets the second orthologue in the orthology relationship.

- Method Detail
  - getFirstOrthologue
```
Orthologue getFirstOrthologue()
```
    gets the first orthologue in the orthology relationship.
    I agree that this access route is somewhat sucky for a symmetric relationship but I'd hate returning a Set of orthologues more and all the fiddling would require.
  - getSecondOrthologue
```
Orthologue getSecondOrthologue()
```
    gets the first orthologue in the orthology relationship. This will be the one with the lower TaxonID.
  - getSimilarity
```
SimilarityType getSimilarity()
```
    gets the second orthologue in the orthology relationship. This will be the one with the higher TaxonID.
  - getPercentIdentity
```
double getPercentIdentity()
```
    get percentage identity.
  - getRef
```
String getRef()
```
    get reference to evidence for orthology.