SimpleOrthologueSet (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.utils.AbstractChangeable
- - org.biojava.bio.program.homologene.AbstractOrthologueSet
  - - org.biojava.bio.program.homologene.SimpleOrthologueSet

All Implemented Interfaces:: OrthologueSet, Changeable

public class SimpleOrthologueSet
extends AbstractOrthologueSet

Nested Class Summary

Nested Classes
Modifier and Type Class Description

class SimpleOrthologueSet.Iterator

Field Summary
- Fields inherited from interface org.biojava.bio.program.homologene.OrthologueSet
  MODIFY

Constructor Summary

Constructors
Constructor Description

SimpleOrthologueSet()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addOrthologue(Orthologue ortho)`	Add an orthologue to the set.
`Orthologue`	`getOrthologue(String homologeneID)`
`OrthologueSet.Iterator`	`iterator()`	Return an iterator to the contents of the set.
`void`	`removeOrthologue(Orthologue ortho)`	Remove an orthologue from the set.

Methods inherited from class org.biojava.bio.program.homologene.AbstractOrthologueSet
filter

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SimpleOrthologueSet
```
public SimpleOrthologueSet()
```
- Method Detail
  - addOrthologue
```
public void addOrthologue(Orthologue ortho)
                   throws ChangeVetoException
```
    Description copied from interface: OrthologueSet
    
    Add an orthologue to the set.
    
    Throws:
    
    ChangeVetoException
  - removeOrthologue
```
public void removeOrthologue(Orthologue ortho)
                      throws ChangeVetoException
```
    Description copied from interface: OrthologueSet
    
    Remove an orthologue from the set.
    
    Throws:
    
    ChangeVetoException
  - getOrthologue
```
public Orthologue getOrthologue(String homologeneID)
```
  - iterator
```
public OrthologueSet.Iterator iterator()
```
    Description copied from interface: OrthologueSet
    
    Return an iterator to the contents of the set.