Package org.biojava.bio.program

Java wrappers for interacting with external bioinformatics tools.

Class Summary

Class	Description
BlastLikeToXMLConverter	A class that converts the raw output from a variety of bioinformatics software and converts it to XML that will validate against the biojava:BlastLikeDataSetCollection DTD.
Meme	The results of a meme run.
PdbToXMLConverter	A class that converts Protein Data Bank (PDB) to XML that will validate against the biojava:MacromolecularStructure DTD.