Parsers which offer XML representations of the output from common bioinformatics tools.
Class Summary Class Description BlastLikeSAXParserA facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software. ClustalWAlignmentSAXParserA SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format. FastaSearchSAXParser
FastaSearchSAXParseris a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).
FastaSequenceSAXParserA SAX2 parser for dealing with multiple sequences in FASTA format. PdbSAXParserA SAX2 parser for dealing with native PDB files. SequenceAlignmentSAXParserA SAX2 parser for dealing with a sequence alignments.