Package org.biojava.bio.proteomics

Utilities to aid in performing various physical analysis of proteins.

Class Summary

Class	Description
Digest	This class contains methods for calculating the results of proteolytic digestion of a protein sequence this class is not designed to be thread safe
IsoelectricPointCalc	Class that computes isoelectric point for denaturated proteins.
MassCalc	MassCalc calculates the mass of peptides which for our purposes are SymbolLists which contain Symbolsfrom the protein Alphabet.
Protease	The protease class stores parameters needed by Digest to digest a protein sequence.
ProteaseManager	Registry and utility methods for Proteases.
StructureTools	Simple access to protein seccondary structure assignments.