Package org.biojava.bio.search
Class SearchContentFilter
- java.lang.Object
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- org.biojava.bio.search.SearchContentFilter
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- All Implemented Interfaces:
SearchContentHandler
public class SearchContentFilter extends Object implements SearchContentHandler
Filtering implementation of SearchContentHandler that by default passes all messages on to the next delegate in the chain.
In this handler, all info will be passed onto a delegate handler. You can build up a chain of filters by using one filter as the delegate for another. When you over-ride a method in a filter, you can modify any state you wish. If you want that to propogate on, you should call the method on yourself via super.(), if not, just return.
It is your responsibility to ensure that the events emitted from your filter are sensible. In particular, start/end messages must be paired even after filtering.
Example
// we have a handler from somewhere SearchContentHandler handler = ...; // now we are going to mutate all "score" notifications to Double instances // from strings SearchContentHandler filter = new SearchContentFilter() { public void addHitProperty(Object key, Object value) { if("score".equals(key)) { if(value instanceof String) { value = new Double(value); } } super(key, value); } };- Since:
- 1.3
- Author:
- Matthew Pocock
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Constructor Summary
Constructors Constructor Description SearchContentFilter(SearchContentHandler delegate)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description voidaddHitProperty(Object key, Object value)TheaddHitPropertymethod adds a key/value pair containing some property of a particular hit.voidaddSearchProperty(Object key, Object value)TheaddSearchPropertymethod adds a key/value pair containing some property of the overall search result.voidaddSubHitProperty(Object key, Object value)TheaddSubHitPropertymethod adds a key/value pair containing some property of a particular subhit.voidendHeader()TheendHeadermethod indicates the end of a formatted header.voidendHit()TheendHitmethod indicates the end of a formatted hit.voidendSearch()TheendSearchmethod indicates the end of useful search information.voidendSubHit()TheendSubHitmethod indicates the end of a formatted subhit.booleangetMoreSearches()getMoreSearchesreturns the state of theSearchContentHandlerwith respect to further searches from its data source.voidsetDatabaseID(String databaseID)setDatabaseIDidentifies the database searched by a name, ID or URN.voidsetMoreSearches(boolean val)setMoreSearchessets the state of theSearchContentHandler's expectation of receiving more results.voidsetQueryID(String queryID)setQueryIDidentifies the query sequence by a name, ID or URN.voidstartHeader()ThestartHeadermethod indicates the start of a formatted header.voidstartHit()ThestartHitmethod indicates the start of a formatted hit.voidstartSearch()ThestartSearchmethod indicates the start of useful search information.voidstartSubHit()ThestartSubHitmethod indicates the start of a formatted subhit.
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Constructor Detail
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SearchContentFilter
public SearchContentFilter(SearchContentHandler delegate)
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Method Detail
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addHitProperty
public void addHitProperty(Object key, Object value)
Description copied from interface:SearchContentHandlerTheaddHitPropertymethod adds a key/value pair containing some property of a particular hit.- Specified by:
addHitPropertyin interfaceSearchContentHandler- Parameters:
key- anObject.value- anObject.
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addSearchProperty
public void addSearchProperty(Object key, Object value)
Description copied from interface:SearchContentHandlerTheaddSearchPropertymethod adds a key/value pair containing some property of the overall search result.- Specified by:
addSearchPropertyin interfaceSearchContentHandler- Parameters:
key- anObject.value- anObject.
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addSubHitProperty
public void addSubHitProperty(Object key, Object value)
Description copied from interface:SearchContentHandlerTheaddSubHitPropertymethod adds a key/value pair containing some property of a particular subhit.- Specified by:
addSubHitPropertyin interfaceSearchContentHandler- Parameters:
key- anObject.value- anObject.
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startHeader
public void startHeader()
Description copied from interface:SearchContentHandlerThestartHeadermethod indicates the start of a formatted header. This usually contains information relevant to the search as a whole.- Specified by:
startHeaderin interfaceSearchContentHandler
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endHeader
public void endHeader()
Description copied from interface:SearchContentHandlerTheendHeadermethod indicates the end of a formatted header.- Specified by:
endHeaderin interfaceSearchContentHandler
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startHit
public void startHit()
Description copied from interface:SearchContentHandlerThestartHitmethod indicates the start of a formatted hit. This could be a single line, or a block of lines.- Specified by:
startHitin interfaceSearchContentHandler
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endHit
public void endHit()
Description copied from interface:SearchContentHandlerTheendHitmethod indicates the end of a formatted hit.- Specified by:
endHitin interfaceSearchContentHandler
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startSearch
public void startSearch()
Description copied from interface:SearchContentHandlerThestartSearchmethod indicates the start of useful search information.- Specified by:
startSearchin interfaceSearchContentHandler
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endSearch
public void endSearch()
Description copied from interface:SearchContentHandlerTheendSearchmethod indicates the end of useful search information.- Specified by:
endSearchin interfaceSearchContentHandler
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startSubHit
public void startSubHit()
Description copied from interface:SearchContentHandlerThestartSubHitmethod indicates the start of a formatted subhit. There may be zero or more of these per hit.- Specified by:
startSubHitin interfaceSearchContentHandler
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endSubHit
public void endSubHit()
Description copied from interface:SearchContentHandlerTheendSubHitmethod indicates the end of a formatted subhit.- Specified by:
endSubHitin interfaceSearchContentHandler
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setQueryID
public void setQueryID(String queryID)
Description copied from interface:SearchContentHandlersetQueryIDidentifies the query sequence by a name, ID or URN.- Specified by:
setQueryIDin interfaceSearchContentHandler- Parameters:
queryID- aStringwhich should be an unique identifer for the sequence.
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setDatabaseID
public void setDatabaseID(String databaseID)
Description copied from interface:SearchContentHandlersetDatabaseIDidentifies the database searched by a name, ID or URN.- Specified by:
setDatabaseIDin interfaceSearchContentHandler- Parameters:
databaseID- aStringwhich should be an unique identifier for the database searched.
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getMoreSearches
public boolean getMoreSearches()
Description copied from interface:SearchContentHandlergetMoreSearchesreturns the state of theSearchContentHandlerwith respect to further searches from its data source. Used for handling streams of search results.- Specified by:
getMoreSearchesin interfaceSearchContentHandler- Returns:
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booleanvalue.
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setMoreSearches
public void setMoreSearches(boolean val)
Description copied from interface:SearchContentHandlersetMoreSearchessets the state of theSearchContentHandler's expectation of receiving more results. Used for handling streams of search results.- Specified by:
setMoreSearchesin interfaceSearchContentHandler- Parameters:
val- abooleanvalue.
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