Interface SeqSimilaritySearchResult

    • Method Detail

      • getQuerySequence

        Sequence getQuerySequence()
        Returns the query sequence which was used to perform the search.
        Returns:
        the Sequence object used to search the SequenceDB. Never returns null.
      • getSequenceDB

        SequenceDB getSequenceDB()
        Returns the sequence database against which the search was performed.
        Returns:
        the SequenceDB object against which the search was carried out. Never returns null.
      • getSearchParameters

        Map getSearchParameters()
        Returns the search parameters used in the search that produced this search result.
        Returns:
        the (immutable) search parameter Map object. May return null.
      • getHits

        List getHits()
        Return all hits in this sequence similarity search result. The hits are sorted from best to worst.
        Returns:
        an (immutable) List of SeqSimilaritySearchHit objects containing all hits in the search result. Never returns null but may return an empty list.