- All Known Implementing Classes:
public interface SequenceFactoryDeprecated.use org.biojavax.bio.seq.io.RichSequenceBuilder or use org.biojavax.bio.seq.io.SequenceBuilderThe interface for objects that will manufacture sequences.
The factory layer is in here as sequences are potentialy heavy-weight, so we want to decouple their possibly complicated creation from the code that wants to make them.
- Matthew Pocock
Sequence createSequence(SymbolList symList, String uri, String name, Annotation annotation)Deprecated.Creates a sequence using these parameters.
symList- the SymbolList defining the 'sequence'
uri- the uri of the sequence. This will be returned by the getURN() method on Sequence.
name- the name
annotation- a hint for the annotation of the resulting sequence
- a new Sequence object