EntryNamRandomAccess (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.bio.seq.db.emblcd.EmblCDROMRandomAccess
- - org.biojava.bio.seq.db.emblcd.EntryNamRandomAccess

```
public class EntryNamRandomAccess
extends EmblCDROMRandomAccess
```
EntryNamRandomAccess objects provide random access to records within the "entrynam.idx" file of an EMBL CD-ROM format binary index. Records are retrieved by their sequence ID.

Since:

1.2

Author:

Keith James

Field Summary
- Fields inherited from class org.biojava.bio.seq.db.emblcd.EmblCDROMRandomAccess
  raIndexFile, recBytes, recParser

Constructor Summary

Constructors
Constructor	Description
`EntryNamRandomAccess(File indexFile, int headerLength, int recordLength, long recordCount)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected String`	`getRecordKey(Object[] record)`	`getRecordKey` returns the field from the record on which the records were sorted in the index.
`protected Object[]`	`readRecord()`	`readRecord` creates an array of Objects from the raw byte array of a single record.

Methods inherited from class org.biojava.bio.seq.db.emblcd.EmblCDROMRandomAccess
close, findRecord, getFile

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - EntryNamRandomAccess
```
public EntryNamRandomAccess(File indexFile,
                            int headerLength,
                            int recordLength,
                            long recordCount)
                     throws FileNotFoundException
```
    Throws:
    
    FileNotFoundException
- Method Detail
  - readRecord
```
protected Object[] readRecord()
                       throws IOException
```
    readRecord creates an array of Objects from the raw byte array of a single record. For this file type the array contains String seqID, Long rPosition, Long sPosition, Integer fileNumber. See EMBOSS documentation for a full description.
    
    Specified by:
    
    readRecord in class EmblCDROMRandomAccess
    
    Returns:
    
    an Object [] array.
    
    Throws:
    
    IOException - if an error occurs.
  - getRecordKey
```
protected String getRecordKey(Object[] record)
```
    getRecordKey returns the field from the record on which the records were sorted in the index. (i.e. sequence ID or accession number).
    
    Specified by:
    
    getRecordKey in class EmblCDROMRandomAccess
    
    Returns:
    
    a String.