Package org.biojava.bio.seq.io.game

Class GAMEFeatureSpanHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.seq.io.game.StAXFeatureHandler

org.biojava.bio.seq.io.game.GAMEFeatureSpanHandler

All Implemented Interfaces:

StAXContentHandler

public class GAMEFeatureSpanHandler
extends StAXFeatureHandler

Handles the <feature_span> element

Since:

1.8

Author:

David Huen

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	GAME_FEATURESPAN_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.game.StAXFeatureHandler

callbackStack, endLoc, featureListener, featureTemplate, stackLevel, startLoc

Method Summary

Modifier and Type	Method	Description
protected Feature.Template	createTemplate()	generates a very basic Template for the feature with SmallAnnotation in the annotation field.
void	endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler)	Element specific exit handler Subclass to do anything useful.
void	startElementHandler(String nsURI, String localName, String qName, Attributes attrs)	Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.game.StAXFeatureHandler

addHandler, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, setFeatureListener, setHandlerCharacteristics, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GAME_FEATURESPAN_HANDLER_FACTORY

public static final StAXHandlerFactory GAME_FEATURESPAN_HANDLER_FACTORY

Method Detail

createTemplate

protected Feature.Template createTemplate()

Description copied from class: StAXFeatureHandler

generates a very basic Template for the feature with SmallAnnotation in the annotation field.

Override if you wish a more specialised Template.

Overrides:

createTemplate in class StAXFeatureHandler

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)

Description copied from class: StAXFeatureHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXFeatureHandler

endElementHandler

public void endElementHandler(String nsURI,
                              String localName,
                              String qName,
                              StAXContentHandler handler)

Description copied from class: StAXFeatureHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXFeatureHandler