Package org.biojava.bio.seq.io.game

Class SequenceContentHandlerBase

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.seq.io.game.SequenceContentHandlerBase

All Implemented Interfaces:

StAXContentHandler

Direct Known Subclasses:

GAMEResiduesPropHandler

public class SequenceContentHandlerBase
extends StAXContentHandlerBase

StAX handler for elements containing sequence

Since:

1.8

Author:

David Huen

Constructor Summary

Constructors

Constructor	Description
SequenceContentHandlerBase()

Method Summary

Modifier and Type	Method	Description
void	characters(char[] ch, int start, int length)	Signal a span of character data in the XML input.
void	endElement(String nsURI, String localName, String qName, StAXContentHandler handler)
void	setStreamParser(StreamParser parser)	assign a StreamParser object to instance.
void	startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm)

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceContentHandlerBase

public SequenceContentHandlerBase()

Method Detail

startElement

public void startElement(String nsURI,
                         String localName,
                         String qName,
                         Attributes attrs,
                         DelegationManager dm)
                  throws SAXException

Specified by:

startElement in interface StAXContentHandler

Overrides:

startElement in class StAXContentHandlerBase

Throws:

SAXException

endElement

public void endElement(String nsURI,
                       String localName,
                       String qName,
                       StAXContentHandler handler)
                throws SAXException

Specified by:

endElement in interface StAXContentHandler

Overrides:

endElement in class StAXContentHandlerBase

Throws:

SAXException

setStreamParser

public void setStreamParser(StreamParser parser)

assign a StreamParser object to instance.

characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws SAXException

Description copied from class: StAXContentHandlerBase

Signal a span of character data in the XML input.

Specified by:

characters in interface StAXContentHandler

Overrides:

characters in class StAXContentHandlerBase

Parameters:

ch - an array of characters

start - index of the first significant character for this event.

length - number of characters significant to this event.

Throws:

SAXException