Package org.biojava.bio.symbol

Class RangeLocation

java.lang.Object

org.biojava.bio.symbol.AbstractLocation

org.biojava.bio.symbol.AbstractRangeLocation

org.biojava.bio.symbol.RangeLocation

All Implemented Interfaces:

Serializable, Location

Direct Known Subclasses:

MergeLocation

public class RangeLocation
extends AbstractRangeLocation
implements Serializable

A simple implementation of Location that contains all points between getMin and getMax inclusive.

This will in practice be the most commonly used pure-java implementation.

Author:

Matthew Pocock

See Also:

Serialized Form

Field Summary

Fields inherited from interface org.biojava.bio.symbol.Location

empty, full, naturalOrder

Constructor Summary

Constructors

Constructor	Description
RangeLocation(int min, int max)	Construct a new RangeLocation from min to max.

Method Summary

Modifier and Type	Method	Description
int	getMax()	The maximum position contained.
int	getMin()	The minimum position contained.
String	toString()
Location	translate(int dist)	Create a location that is a translation of this location.

Methods inherited from class org.biojava.bio.symbol.AbstractRangeLocation

blockIterator, contains, isContiguous, symbols

Methods inherited from class org.biojava.bio.symbol.AbstractLocation

contains, equals, getDecorator, hashCode, intersection, newInstance, overlaps, union

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

RangeLocation

public RangeLocation(int min,
                     int max)
              throws IndexOutOfBoundsException

Construct a new RangeLocation from min to max.

Throws:

IndexOutOfBoundsException

Method Detail

getMin

public int getMin()

Description copied from interface: Location

The minimum position contained.

WARNING: The location will not contain every point between getMin() and getMax() if isContiguous() is false. If isContiguous() does return false you should use the Iterator returned by blockIterator() to iterate over the minimum set of contiguous blocks that make up this Location

Specified by:

getMin in interface Location

Returns:

the minimum position contained

getMax

public int getMax()

Description copied from interface: Location

The maximum position contained.

WARNING: The location will not contain every point between getMin() and getMax() if isContiguous() is false. If isContiguous() does return false you should use the Iterator returned by blockIterator() to iterate over the minimum set of contiguous blocks that make up this Location

Specified by:

getMax in interface Location

Returns:

the maximum position contained

translate

public Location translate(int dist)

Description copied from interface: Location

Create a location that is a translation of this location.

Specified by:

translate in interface Location

Parameters:

dist - the distance to translate (to the right)

toString

public String toString()

Overrides:

toString in class Object