Package org.biojava.bio.symbol

Class SimpleSymbolPropertyTable

java.lang.Object

org.biojava.bio.symbol.SimpleSymbolPropertyTable

All Implemented Interfaces:

SymbolPropertyTable

Direct Known Subclasses:

AAindex

public class SimpleSymbolPropertyTable
extends Object
implements SymbolPropertyTable

Class that implements the SymbolPropertyTable interface

Author:

Mike Jones (primary author), David Huen (minor, extended class to cover pK)

Field Summary

Fields inherited from interface org.biojava.bio.symbol.SymbolPropertyTable

AVG_MASS, HYDROPATHICITY, MONO_MASS, PK, PK_Cterm, PK_Nterm

Constructor Summary

Constructors

Constructor	Description
SimpleSymbolPropertyTable(Alphabet source, String name)

Method Summary

Modifier and Type	Method	Description
Alphabet	getAlphabet()
double	getDoubleValue(Symbol s)
String	getName()
void	setDoubleProperty(Symbol s, String value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleSymbolPropertyTable

public SimpleSymbolPropertyTable(Alphabet source,
                                 String name)

Method Detail

setDoubleProperty

public void setDoubleProperty(Symbol s,
                              String value)
                       throws IllegalSymbolException

Throws:

IllegalSymbolException

getName

public String getName()

Specified by:

getName in interface SymbolPropertyTable

getAlphabet

public Alphabet getAlphabet()

Specified by:

getAlphabet in interface SymbolPropertyTable

getDoubleValue

public double getDoubleValue(Symbol s)
                      throws IllegalSymbolException

Specified by:

getDoubleValue in interface SymbolPropertyTable

Throws:

IllegalSymbolException