Package org.biojava.bio.symbol
Interface WobbleDistribution
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public interface WobbleDistribution
an object to return statistics about the frequency of the wobble base in a set of synonymous codons.- Since:
- 1.3
- Author:
- David Huen
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description DistributiongetFrequencyOfNonWobbleBases()returns the frequency with which synonymous codons start with a specified pair of bases.SetgetNonWobbleBases()returns Set containing the nonWobbleBases that occur in codons that encode this residueSymbolgetResidue()returns the residue encoded by this WobbleDistributionDistributiongetWobbleFrequency(Symbol nonWobbleBases)returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases.
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Method Detail
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getResidue
Symbol getResidue()
returns the residue encoded by this WobbleDistribution
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getNonWobbleBases
Set getNonWobbleBases()
returns Set containing the nonWobbleBases that occur in codons that encode this residue
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getFrequencyOfNonWobbleBases
Distribution getFrequencyOfNonWobbleBases()
returns the frequency with which synonymous codons start with a specified pair of bases.
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getWobbleFrequency
Distribution getWobbleFrequency(Symbol nonWobbleBases)
returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases. (sums to one over this set).
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