Package org.biojava.bio.symbol
Interface WobbleDistribution
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public interface WobbleDistribution
an object to return statistics about the frequency of the wobble base in a set of synonymous codons.- Since:
- 1.3
- Author:
- David Huen
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description Distribution
getFrequencyOfNonWobbleBases()
returns the frequency with which synonymous codons start with a specified pair of bases.Set
getNonWobbleBases()
returns Set containing the nonWobbleBases that occur in codons that encode this residueSymbol
getResidue()
returns the residue encoded by this WobbleDistributionDistribution
getWobbleFrequency(Symbol nonWobbleBases)
returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases.
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Method Detail
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getResidue
Symbol getResidue()
returns the residue encoded by this WobbleDistribution
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getNonWobbleBases
Set getNonWobbleBases()
returns Set containing the nonWobbleBases that occur in codons that encode this residue
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getFrequencyOfNonWobbleBases
Distribution getFrequencyOfNonWobbleBases()
returns the frequency with which synonymous codons start with a specified pair of bases.
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getWobbleFrequency
Distribution getWobbleFrequency(Symbol nonWobbleBases)
returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases. (sums to one over this set).
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