Interface WobbleDistribution

  • public interface WobbleDistribution
    an object to return statistics about the frequency of the wobble base in a set of synonymous codons.
    David Huen
    • Method Detail

      • getResidue

        Symbol getResidue()
        returns the residue encoded by this WobbleDistribution
      • getNonWobbleBases

        Set getNonWobbleBases()
        returns Set containing the nonWobbleBases that occur in codons that encode this residue
      • getWobbleFrequency

        Distribution getWobbleFrequency​(Symbol nonWobbleBases)
        returns the frequency of a specific wobble base in a set of synonymous codons that start with the same two bases. (sums to one over this set).