Uses of Class org.biojava.bio.symbol.UkkonenSuffixTree.SuffixNode (biojava-legacy 1.9.5 API)

Packages that use UkkonenSuffixTree.SuffixNode
Package Description

org.biojava.bio.symbol
Representation of the Symbols that make up a sequence, and locations within them.

Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNode
Modifier and Type	Method	Description
`UkkonenSuffixTree.SuffixNode`	UkkonenSuffixTree.`getRoot()`
`UkkonenSuffixTree.SuffixNode`	UkkonenSuffixTree.`jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to)`	Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
`UkkonenSuffixTree.SuffixNode`	UkkonenSuffixTree.`walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to)`	This method is used to walk down the tree, from a given node.

Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNode
Modifier and Type	Method	Description
`protected ArrayList`	UkkonenSuffixTree.`getAllNodes(UkkonenSuffixTree.SuffixNode root, ArrayList list, boolean leavesOnly)`
`protected CharSequence`	UkkonenSuffixTree.`getEdgeLabel(UkkonenSuffixTree.SuffixNode child)`
`protected int`	UkkonenSuffixTree.`getEdgeLength(UkkonenSuffixTree.SuffixNode child)`	Tree navigation methods
`protected CharSequence`	UkkonenSuffixTree.`getLabel(UkkonenSuffixTree.SuffixNode node)`
`protected int`	UkkonenSuffixTree.`getPathEnd(UkkonenSuffixTree.SuffixNode node)`
`protected int`	UkkonenSuffixTree.`getPathLength(UkkonenSuffixTree.SuffixNode node)`
`UkkonenSuffixTree.SuffixNode`	UkkonenSuffixTree.`jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to)`	Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
`UkkonenSuffixTree.SuffixNode`	UkkonenSuffixTree.`walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to)`	This method is used to walk down the tree, from a given node.