Package org.biojava.utils.io

I/O utility classes.

Interface Summary

Interface	Description
Seekable	This interface provides a collective name for IO classes that implement a seek function (e.g., RandomAccessFile).

Class Summary

Class	Description
CachingInputStream	A wrapper around InputStream that provides in-memory caching of the input data.
CountedBufferedReader
FlatFileCache	Provides a cache for storing multiple small files in memory.
InputStreamProvider	A class that provides an InputStream from a File.
LargeBuffer	Wrapper arround MappedByteBuffers to allow long-indexed access to files larger than 2 gigs.
RAF
RandomAccessReader	RandomAccessReader extends Reader to provide a means to create buffered Readers from RandomAccessFiles.
SoftHashMap	A in memory cache using soft references.
UncompressInputStream	This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).