Uses of Interface
org.biojavax.bio.db.biosql.BioSQLFeatureFilter

Packages that use BioSQLFeatureFilter

Package	Description
org.biojavax.bio.db.biosql	Interface between biojava and biosql databases

Uses of BioSQLFeatureFilter in org.biojavax.bio.db.biosql

Classes in org.biojavax.bio.db.biosql that implement BioSQLFeatureFilter

Modifier and Type	Class	Description
class	BioSQLAcceptAllFilter	The class that accepts all features.
class	BioSQLAcceptNoneFilter	The class that accepts no features.
static class	BioSQLFeatureFilter.And	A filter that returns all features accepted by both child filter.
static class	BioSQLFeatureFilter.ByName	Construct one of these to filter features by display name.
static class	BioSQLFeatureFilter.ByNote	A filter that returns all features that have the given note, and the value and rank is checked as well.
static class	BioSQLFeatureFilter.ByNoteTermOnly	A filter that returns all features that have a note with the given term.
static class	BioSQLFeatureFilter.ByRank	Construct one of these to filter features by rank.
static class	BioSQLFeatureFilter.BySequenceName	Accept features that reside on a sequence with a particular name.
static class	BioSQLFeatureFilter.BySourceTerm	Construct one of these to filter features by source.
static class	BioSQLFeatureFilter.BySourceTermName	Construct one of these to filter features by source (name only - parent ontology is ignored).
static class	BioSQLFeatureFilter.ByStrand	A filter that returns all features having locations on a given strand.
static class	BioSQLFeatureFilter.ByTypeTerm	Construct one of these to filter features by type.
static class	BioSQLFeatureFilter.ByTypeTermName	Construct one of these to filter features by type (name only - parent ontology is ignored).
static class	BioSQLFeatureFilter.ContainedByRichLocation	A filter that returns all features contained within a location.
static class	BioSQLFeatureFilter.HibernateFeatureFilter	A filter for Hibernate-BioSQL filters to extend.
static class	BioSQLFeatureFilter.Not	A filter that returns all features not accepted by a child filter.
static class	BioSQLFeatureFilter.Or	A filter that returns all features accepted by at least one child filter.
static class	BioSQLFeatureFilter.OverlapsRichLocation	A filter that returns all features overlapping a location.

Fields in org.biojavax.bio.db.biosql declared as BioSQLFeatureFilter

Modifier and Type	Field	Description
static BioSQLFeatureFilter	BioSQLFeatureFilter.all	All features are selected by this filter.
static BioSQLFeatureFilter	BioSQLFeatureFilter.none	No features are selected by this filter.

Methods in org.biojavax.bio.db.biosql that return BioSQLFeatureFilter

Modifier and Type	Method	Description
static BioSQLFeatureFilter	BioSQLFeatureFilter.Tools.convert(FeatureFilter ff)	Convert a non-BioSQL FeatureFilter into a BioSQL one.
BioSQLFeatureFilter	BioSQLFeatureFilter.Not.getChild()
BioSQLFeatureFilter	BioSQLFeatureFilter.And.getChild1()
BioSQLFeatureFilter	BioSQLFeatureFilter.Or.getChild1()
BioSQLFeatureFilter	BioSQLFeatureFilter.And.getChild2()
BioSQLFeatureFilter	BioSQLFeatureFilter.Or.getChild2()

Constructors in org.biojavax.bio.db.biosql with parameters of type BioSQLFeatureFilter

Constructor	Description
And(BioSQLFeatureFilter c1, BioSQLFeatureFilter c2)
Not(BioSQLFeatureFilter child)
Or(BioSQLFeatureFilter c1, BioSQLFeatureFilter c2)