Uses of Interface
org.biojavax.RankedCrossRef

Packages that use RankedCrossRef

Package	Description
org.biojavax	The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.
org.biojavax.ontology	Extensions to the biojava ontology model that represent BioSQL ontology.

Uses of RankedCrossRef in org.biojavax

Classes in org.biojavax that implement RankedCrossRef

Modifier and Type	Class	Description
class	SimpleRankedCrossRef	Simple implementation of RankedCrossRef.

Methods in org.biojavax that return types with arguments of type RankedCrossRef

Modifier and Type	Method	Description
Set<RankedCrossRef>	RankedCrossRefable.getRankedCrossRefs()	Returns the set of all ranked cross references associated with an object.

Methods in org.biojavax with parameters of type RankedCrossRef

Modifier and Type	Method	Description
void	RankedCrossRefable.addRankedCrossRef(RankedCrossRef crossref)	Adds a ranked cross reference to the existing set.
void	RankedCrossRefable.removeRankedCrossRef(RankedCrossRef crossref)	Removes a ranked cross reference from the existing set.

Method parameters in org.biojavax with type arguments of type RankedCrossRef

Modifier and Type	Method	Description
void	RankedCrossRefable.setRankedCrossRefs(Set<RankedCrossRef> crossrefs)	Sets the ranked cross references associated with an object.

Uses of RankedCrossRef in org.biojavax.bio

Methods in org.biojavax.bio that return types with arguments of type RankedCrossRef

Modifier and Type	Method	Description
Set<RankedCrossRef>	SimpleBioEntry.getRankedCrossRefs()	Returns the set of all ranked cross references associated with an object.

Methods in org.biojavax.bio with parameters of type RankedCrossRef

Modifier and Type	Method	Description
void	SimpleBioEntry.addRankedCrossRef(RankedCrossRef crossref)	Adds a ranked cross reference to the existing set.
void	SimpleBioEntry.removeRankedCrossRef(RankedCrossRef crossref)	Removes a ranked cross reference from the existing set.

Method parameters in org.biojavax.bio with type arguments of type RankedCrossRef

Modifier and Type	Method	Description
void	SimpleBioEntry.setRankedCrossRefs(Set<RankedCrossRef> rankedcrossrefs)

Uses of RankedCrossRef in org.biojavax.bio.seq

Methods in org.biojavax.bio.seq that return types with arguments of type RankedCrossRef

Modifier and Type	Method	Description
Set<RankedCrossRef>	SimpleRichFeature.getRankedCrossRefs()	Returns the set of all ranked cross references associated with an object.

Methods in org.biojavax.bio.seq with parameters of type RankedCrossRef

Modifier and Type	Method	Description
void	SimpleRichFeature.addRankedCrossRef(RankedCrossRef crossref)	Adds a ranked cross reference to the existing set.
void	SimpleRichFeature.removeRankedCrossRef(RankedCrossRef crossref)	Removes a ranked cross reference from the existing set.

Uses of RankedCrossRef in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io with parameters of type RankedCrossRef

Modifier and Type	Method	Description
void	DebuggingRichSeqIOListener.setRankedCrossRef(RankedCrossRef crossRef)
void	RichSeqIOAdapter.setRankedCrossRef(RankedCrossRef crossRef)
void	RichSeqIOListener.setRankedCrossRef(RankedCrossRef crossRef)	Call back method so the event emitter can tell the listener about a cross reference.
void	SimpleRichSequenceBuilder.setRankedCrossRef(RankedCrossRef ref)	Call back method so the event emitter can tell the listener about a cross reference.

Uses of RankedCrossRef in org.biojavax.ontology

Methods in org.biojavax.ontology with parameters of type RankedCrossRef

Modifier and Type	Method	Description
void	SimpleComparableTerm.addRankedCrossRef(RankedCrossRef crossref)	Adds a ranked cross reference to the existing set.
void	SimpleComparableTerm.removeRankedCrossRef(RankedCrossRef crossref)	Removes a ranked cross reference from the existing set.