Uses of Interface
org.biojavax.RankedDocRef

Packages that use RankedDocRef

Package	Description
org.biojavax	The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Uses of RankedDocRef in org.biojavax

Classes in org.biojavax that implement RankedDocRef

Modifier and Type	Class	Description
class	SimpleRankedDocRef	Represents a documentary reference.

Uses of RankedDocRef in org.biojavax.bio

Methods in org.biojavax.bio that return types with arguments of type RankedDocRef

Modifier and Type	Method	Description
Set<RankedDocRef>	BioEntry.getRankedDocRefs()	Returns a set of all bioentrydocrefs associated with this bioentry.
Set<RankedDocRef>	SimpleBioEntry.getRankedDocRefs()	Returns a set of all bioentrydocrefs associated with this bioentry.

Methods in org.biojavax.bio with parameters of type RankedDocRef

Modifier and Type	Method	Description
void	BioEntry.addRankedDocRef(RankedDocRef docref)	Adds a ranked docref instance to this bioentry.
void	SimpleBioEntry.addRankedDocRef(RankedDocRef docref)	Adds a ranked docref instance to this bioentry.
void	BioEntry.removeRankedDocRef(RankedDocRef docref)	Removes a ranked docref instance from this bioentry.
void	SimpleBioEntry.removeRankedDocRef(RankedDocRef docref)	Removes a ranked docref instance from this bioentry.

Uses of RankedDocRef in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io with parameters of type RankedDocRef

Modifier and Type	Method	Description
void	DebuggingRichSeqIOListener.setRankedDocRef(RankedDocRef ref)
void	RichSeqIOAdapter.setRankedDocRef(RankedDocRef ref)
void	RichSeqIOListener.setRankedDocRef(RankedDocRef ref)	Call back method so the event emitter can tell the listener about a literature reference in the record being read.
void	SimpleRichSequenceBuilder.setRankedDocRef(RankedDocRef ref)	Call back method so the event emitter can tell the listener about a literature reference in the record being read.